{ "_id": "6a1d3bff1d7bb097a0a3f422", "Package": "DrImpute", "Version": "1.0", "Date": "2017-7-15", "Title": "Imputing Dropout Events in Single-Cell RNA-Sequencing Data", "Description": "R codes for imputing dropout events. Many statistical\nmethods in cell type identification, visualization and lineage\nreconstruction do not account for dropout events ('PCAreduce',\n'SC3', 'PCA', 't-SNE', 'Monocle', 'TSCAN', etc). 'DrImpute' can\nimprove the performance of such software by imputing dropout\nevents.", "Author": "Il-Youp Kwak with contributions from Wuming Gong", "Maintainer": "Il-Youp Kwak ", "License": "GPL-3", "VignetteBuilder": "knitr", "URL": "https://github.com/ikwak2/DrImpute", "RoxygenNote": "6.0.1", "Repository": "https://ikwak2.r-universe.dev", "Date/Publication": "2017-09-09 09:20:30 UTC", "RemoteUrl": "https://github.com/ikwak2/drimpute", "RemoteRef": "HEAD", "RemoteSha": "f7f882b36ab774ff87509696788cb025033f61fc", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-06-01 07:51:41 UTC", "User": "root" }, "MD5sum": "f5d574061b5554bb3b0598414cc1d3c2", "_user": "ikwak2", "_type": "src", "_file": "DrImpute_1.0.tar.gz", "_fileid": "f5afb01165b7f2b01a29657b5a80c2fe79ae56011c332e665ba3fe690b785b9d", "_filesize": 1518584, "_sha256": "f5afb01165b7f2b01a29657b5a80c2fe79ae56011c332e665ba3fe690b785b9d", "_created": "2026-06-01T07:51:41.000Z", "_published": "2026-06-01T07:59:59.280Z", "_distro": "noble", "_jobs": [ { "job": 78808891198, "time": 145, "config": "linux-devel-arm64", "r": "4.7.0", "check": "OK", "artifact": "7326122960" }, { "job": 78808891190, "time": 191, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7326137296" }, { "job": 78808891185, "time": 160, "config": "linux-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7326127989" }, { "job": 78808891187, "time": 148, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7326124038" }, { "job": 78808891249, "time": 149, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7326131866" }, { "job": 78808891243, "time": 398, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "7326205423" }, { "job": 78808891273, "time": 173, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7326138518" }, { "job": 78808891288, "time": 208, "config": "macos-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7326136110" }, { "job": 78808391296, "time": 209, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7326078257" }, { "job": 78808891166, "time": 126, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7326117423" }, { "job": 78808891220, "time": 112, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7326113059" }, { "job": 78808891189, "time": 109, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7326112518" }, { "job": 78808891224, "time": 168, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7326129954" } ], "_buildurl": "https://github.com/r-universe/ikwak2/actions/runs/26742094403", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/ikwak2/drimpute", "_commit": { "id": "f7f882b36ab774ff87509696788cb025033f61fc", "author": "ilyoup kwak ", "committer": "ilyoup kwak ", "message": "readme update\n", "time": 1504948830 }, "_maintainer": { "name": "Il-Youp Kwak", "email": "ilyoup.kwak@gmail.com", "login": "ikwak2", "description": "", "uuid": 944558 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.1.0", "role": "Depends" }, { "package": "Rcpp", "role": "LinkingTo" }, { "package": "RcppArmadillo", "role": "LinkingTo" }, { "package": "Rcpp", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "devtools", "role": "Suggests" }, { "package": "roxygen2", "role": "Suggests" }, { "package": "irlba", "role": "Suggests" } ], "_owner": "ikwak2", "_selfowned": true, "_usedby": 1, "_updates": [], "_tags": [], "_stars": 4, "_contributors": [ { "user": "ikwak2", "count": 22, "uuid": 944558 } ], "_userbio": { "uuid": 944558, "type": "user", "name": "Il-Youp Kwak" }, "_downloads": { "count": 288, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/DrImpute" }, "_mentions": 19, "_devurl": "https://github.com/ikwak2/drimpute", "_searchresults": 89, "_topics": [ "cpp" ], "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/DrImpute.html", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/ikwak2/drimpute", "_realowner": "ikwak2", "_cranurl": true, "_releases": [ { "version": "1.0", "date": "2017-07-15" } ], "_exports": [ "DrImpute", "getCls", "preprocessSC" ], "_datasets": [ { "name": "exdata", "title": "Usoskin data", "object": "exdata", "file": "exdata.rda", "class": [ "matrix", "array" ], "fields": [ "NF", "NP", "TH", "TH", "NP", "NP", "NP", "TH", "TH", "TH", "PEP", "NF", "NP", "NP", "NP", "TH", "NF", "PEP", "TH", "TH", "PEP", "TH", "NF", "NP", "TH", "TH", "TH", "TH", "TH", "NP", "NF", "NP", "TH", "TH", "TH", "TH", "NP", "NP", "NF", "PEP", "TH", "NP", "TH", "NP", "TH", "PEP", "TH", "TH", "NP", "TH", "NP", "TH", "TH", "TH", "TH", "TH", "NF", "NP", "NF", "NF", "NF", "NP", "PEP", "TH", "TH", "PEP", "PEP", "NP", "TH", "NP", "NP", "PEP", "NP", "TH", "PEP", "PEP", "TH", "NF", "NP", "NF", "PEP", "NP", "NF", "NP", "NF", "TH", "TH", "TH", "NF", "NP", "NF", "TH", "NF", "TH", "TH", "TH", "NF", "NP", "NP", "NP", "NP", "PEP", "NP", "PEP", "NF", "NP", "TH", "NP", "TH", "TH", "TH", "NF", "TH", "TH", "TH", "PEP", "TH", "NP", "PEP", "TH", "TH", "NP", "TH", "NP", "NP", "NF", "NP", "NP", "TH", "NP", "NP", "NF", "TH", "TH", "NF", "TH", "PEP", "TH", "NP", "TH", "PEP", "TH", "TH", "TH", "PEP", "PEP", "TH", "TH", "PEP", "NF" ], "rows": 25334, "table": true, "tojson": true } ], "_help": [ { "page": "DrImpute", "title": "Imputing dropout events in single-cell RNA-sequencing data.", "topics": [ "DrImpute" ] }, { "page": "exdata", "title": "Usoskin data", "topics": [ "exdata" ] }, { "page": "getCls", "title": "get base clustering results using SC3 based clustering methods.", "topics": [ "getCls" ] }, { "page": "preprocessSC", "title": "A function for preprocessing gene expression matrix.", "topics": [ "preprocessSC" ] } ], "_readme": "https://github.com/ikwak2/drimpute/raw/HEAD/README.md", "_rundeps": [ "Rcpp", "RcppArmadillo" ], "_sysdeps": [ { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "14.2.0-4ubuntu2~24.04.1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" } ], "_vignettes": [ { "source": "DrImpute.Rmd", "filename": "DrImpute.html", "title": "DrImpute : imputing dropout events in single-cell RNA-sequencing data", "author": "Il-Youp Kwak", "engine": "knitr::rmarkdown", "headings": [ "Data preparation", "Data analysis" ], "created": "2017-07-15 08:42:29", "modified": "2017-07-15 09:12:30", "commits": 2 } ], "_score": 6.727541257028557, "_indexed": true, "_nocasepkg": "drimpute", "_universes": [ "ikwak2" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.0", "date": "2026-06-01T07:54:11.000Z", "distro": "noble", "arch": "aarch64", "commit": "f7f882b36ab774ff87509696788cb025033f61fc", "fileid": "bdca813c6eba4e2f0aa9971749eed66ab41852f9453752354fbbb49d1c1362a4", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ikwak2/actions/runs/26742094403" }, { "r": "4.7.0", "os": "linux", "version": "1.0", "date": "2026-06-01T07:54:54.000Z", "distro": "noble", "arch": "x86_64", "commit": "f7f882b36ab774ff87509696788cb025033f61fc", "fileid": "c2d57a0968defcfefb6b8b73cf1fabc111e3d68e5ffcbed33ffb67b85e4441c6", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ikwak2/actions/runs/26742094403" }, { "r": "4.6.0", "os": "linux", "version": "1.0", "date": "2026-06-01T07:54:27.000Z", "distro": "noble", "arch": "aarch64", "commit": "f7f882b36ab774ff87509696788cb025033f61fc", "fileid": "e60dff82684a7f2da484fce7b511e41c4080979bf34eaa534fad486d27096dc6", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ikwak2/actions/runs/26742094403" }, { "r": "4.6.0", "os": "linux", "version": "1.0", "date": "2026-06-01T07:54:12.000Z", "distro": "noble", "arch": "x86_64", "commit": "f7f882b36ab774ff87509696788cb025033f61fc", "fileid": "8f4ff8043185b0c69fda68d2250f8d449dc37225cd69dd8903815a8a9a3813f5", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ikwak2/actions/runs/26742094403" }, { "r": "4.5.3", "os": "mac", "version": "1.0", "date": "2026-06-01T07:54:46.000Z", "arch": "aarch64", "commit": "f7f882b36ab774ff87509696788cb025033f61fc", "fileid": "9c30b8251c5f95f4623eee4baa6e26a7c60b32d81c35a88deccb5eb7f7897781", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ikwak2/actions/runs/26742094403" }, { "r": "4.5.3", "os": "mac", "version": "1.0", "date": "2026-06-01T07:58:06.000Z", "arch": "x86_64", "commit": "f7f882b36ab774ff87509696788cb025033f61fc", "fileid": "a8f1a3d14e960210e2dcf036ce9e20a9b76e198292f3fc8460da9aaea1ac850d", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ikwak2/actions/runs/26742094403" }, { "r": "4.6.0", "os": "mac", "version": "1.0", "date": "2026-06-01T07:54:55.000Z", "arch": "aarch64", "commit": "f7f882b36ab774ff87509696788cb025033f61fc", "fileid": "d7f2aa6f0c658e96c5ffb48d8395975e8073f823bda6bdd5b461e56c58075166", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ikwak2/actions/runs/26742094403" }, { "r": "4.6.0", "os": "mac", "version": "1.0", "date": "2026-06-01T07:54:41.000Z", "arch": "x86_64", "commit": "f7f882b36ab774ff87509696788cb025033f61fc", "fileid": "00422f2fff1eac09cce45842ca075d50036f67512955145ce17259f897e533c5", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ikwak2/actions/runs/26742094403" }, { "r": "4.6.0", "os": "wasm", "version": "1.0", "date": "2026-06-01T07:54:07.000Z", "arch": "emscripten", "commit": "f7f882b36ab774ff87509696788cb025033f61fc", "fileid": "63786f6055d49ba0e23cb8e42198b063857cc9c09edd61bfc5b3433bc5f783ff", "status": "success", "buildurl": "https://github.com/r-universe/ikwak2/actions/runs/26742094403" }, { "r": "4.7.0", "os": "win", "version": "1.0", "date": "2026-06-01T07:53:12.000Z", "arch": "x86_64", "commit": "f7f882b36ab774ff87509696788cb025033f61fc", "fileid": "0344edfa151f4d4564a93533ee0c15cc65810792614a8597e90f07d91981adbe", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ikwak2/actions/runs/26742094403" }, { "r": "4.5.3", "os": "win", "version": "1.0", "date": "2026-06-01T07:53:09.000Z", "arch": "x86_64", "commit": "f7f882b36ab774ff87509696788cb025033f61fc", "fileid": "1dd052ec22e4b01d430e8db75065aa380efc552f9157f7d0ddf4fbd82349f9a1", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ikwak2/actions/runs/26742094403" }, { "r": "4.6.0", "os": "win", "version": "1.0", "date": "2026-06-01T07:53:58.000Z", "arch": "x86_64", "commit": "f7f882b36ab774ff87509696788cb025033f61fc", "fileid": "a7a3c5c2f47a40c3ecf19f1f3ce8b40de5cdea07bde8c238a194acc1231aebe9", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ikwak2/actions/runs/26742094403" } ] }