Package: DrImpute 1.0

DrImpute: Imputing Dropout Events in Single-Cell RNA-Sequencing Data

R codes for imputing dropout events. Many statistical methods in cell type identification, visualization and lineage reconstruction do not account for dropout events ('PCAreduce', 'SC3', 'PCA', 't-SNE', 'Monocle', 'TSCAN', etc). 'DrImpute' can improve the performance of such software by imputing dropout events.

Authors:Il-Youp Kwak with contributions from Wuming Gong

DrImpute_1.0.tar.gz
DrImpute_1.0.zip(r-4.5)DrImpute_1.0.zip(r-4.4)DrImpute_1.0.zip(r-4.3)
DrImpute_1.0.tgz(r-4.4-x86_64)DrImpute_1.0.tgz(r-4.4-arm64)DrImpute_1.0.tgz(r-4.3-x86_64)DrImpute_1.0.tgz(r-4.3-arm64)
DrImpute_1.0.tar.gz(r-4.5-noble)DrImpute_1.0.tar.gz(r-4.4-noble)
DrImpute_1.0.tgz(r-4.4-emscripten)DrImpute_1.0.tgz(r-4.3-emscripten)
DrImpute.pdf |DrImpute.html
DrImpute/json (API)

# Install 'DrImpute' in R:
install.packages('DrImpute', repos = c('https://ikwak2.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/ikwak2/drimpute/issues

Uses libs:
  • c++– GNU Standard C++ Library v3
Datasets:

On CRAN:

6.66 score 4 stars 1 packages 77 scripts 231 downloads 19 mentions 3 exports 2 dependencies

Last updated 7 years agofrom:f7f882b36a. Checks:OK: 9. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 08 2024
R-4.5-win-x86_64OKOct 08 2024
R-4.5-linux-x86_64OKOct 08 2024
R-4.4-win-x86_64OKOct 08 2024
R-4.4-mac-x86_64OKOct 08 2024
R-4.4-mac-aarch64OKOct 08 2024
R-4.3-win-x86_64OKOct 08 2024
R-4.3-mac-x86_64OKOct 08 2024
R-4.3-mac-aarch64OKOct 08 2024

Exports:DrImputegetClspreprocessSC

Dependencies:RcppRcppArmadillo

DrImpute : imputing dropout events in single-cell RNA-sequencing data

Rendered fromDrImpute.Rmdusingknitr::rmarkdownon Oct 08 2024.

Last update: 2017-07-15
Started: 2017-07-15